Laboratory of Tree-Ring Research
Dendroclimatology Dendroarchaeology Dendroecology Dendro quantitative methods

University of Arizona, Tucson

Laboratory of Tree-Ring Research

2023 Dendrochronology Intensive Summer Course (DISC)

May 15 – June 2, 2023

tiny map
Map of LTRR
(click to see larger image)
architect's rendering
Historical concept of LTRR
(click to see larger image)

Course Objectives


The objectives of the Dendrochronology Intensive Summer Course (DISC) include:

  • Cover basic background of dendrochronology, the study of tree rings
  • Understand features of tree rings that can be measured and used to assess/reconstruct environmental signals and/or to date events of the past
  • Practice the accurate dating of the year of formation of tree rings, using multiple techniques
  • Learn by experience aspects of fieldwork in dendrochronology, including recording field notes electronically
    • Optional: Explore the Sonoran Desert and Sky Islands of Southern Arizona while in Tucson
  • Learn by experience wood shop techniques of preparing dendrochronological specimens for analysis
  • Learn by experience the measurement of ring width and data management and sharing
  • Learn by experience the use of specialty software for analyzing tree-ring data
  • Synthesize replicated dendrochronological data into a defensible interpretation
  • Make short, formal presentations of results to a general audience
  • Specialize in a specific subdiscipline of dendrochronology:
    • Archaeology: Dating of past events of human origin, as well interpreting those events in climatological/ecological contexts
    • Climatology: Modeling modern tree-ring patterns with meteorological data and then reconstructing climatic variability of the past, as well as interpreting high- and low-frequency temporal variability in archaeological/ecological contexts
    • Ecology: Discerning non-climatic signals in tree-ring series that might be ascribable to ecological processes such as fire, insect outbreaks, hillslope positioning, and/or forest management treatments, as well as interpreting ecological events of the past in archaeological/climatological contexts
  • Network with one another, both professionally and personally

Instructors


Dendroecology

portrait

Paul Sheppard
Lab. of Tree-Ring Research
407 Tree-Ring Building
(520) 621-6474
sheppard @ ltrr.arizona.edu

Dendroclimatology

portrait

Kiyomi Morino
Lab. of Tree-Ring Research
Tree-Ring Building

kiyomi @ arizona.edu

Dendroarchaeology

portrait

Ron Towner
Lab. of Tree-Ring Research
306 Tree-Ring Building
(520) 621-6465
rht @ arizona.edu

TA

portrait

Cecilia Martinez

 
 
cmartinez3 @ arizona.edu


Lecturers


Teaching Assistants
and Administration


  • Don Falk
  • Dave Meko
  • David Frank
  • Steve Leavitt
  • Ann Lynch
  • Margaret Evans
  • Peter Brewer
  • Charlotte Pearson
  • Irina Panyushkina
  • Nick Kessler
  • Chris Baisan (field, shop, lab)
  • Cecilia Martinez (details)
  • Skye Bennett (admin)
  • Martin Munro (LTRR IT)
What to Bring for Tucson and for Fieldwork
Tucson: Mid May and early June will be hot during the day and mildly warm at night. Click here for local weather, then click on Tucson on the map for 5-day forecast. Note: The LTRR classroom is often kept cooler than preferred, so perhaps bring a sweater to class each day while in Tucson.
  • Academic casual attire will suffice for most activities.
  • Hat and sunglasses highly recommendable.
  • Sunscreen also a good idea for outdoor activities lasting more than an hour.
  • Personal laptop:
    • Martin (LTRR IT) has provided instructions on Wifi access while here.
    • An interactive app for crossdating by skeleton plotting will be run a couple of times. It should work on any kind of laptop, in most every browser. Before DISC, please test it out on your equipment and let us know if it doesn't work for you: Crossdating App.
  • PC vs Mac: DPL software runs for sure on PCs, and probably also on Macs after some work-arounds.
  • Don't forget a thumb drive for easy copying, storing, and sharing of data files.
Tucson after hours: Fieldwork: For Ecology, the Arizona White Mountains (east-central Arizona) will be cooler, with at least some chance of rain.
  • As much camping gear as you have (tent, sleeping bag, pillow, everything, this will be car camping)
  • Long clothing (pants and shirt) required for field days
  • Hiking boots required for field days (lighter shoes ok for evening)
  • Hat, sunglasses, and sunscreen essential, maybe a bandana also
  • Cold weather clothing (jacket, gloves, balaclava, raingear); it will be cold at night
  • Small daypack
  • Personal water bottles, travel mugs
  • Personal GPS units desired (but not required)
  • Personal increment borer, if you have one
  • Gloves for coring, as preferred
  • Personal Android device, if you have one
  • Personal medications (personal medical issues?)
    • If you have a serious medical condition that requires daily medication, you must (a) inform the instructor in advance of the field trip, and (b) bring at least a 1 week supply of the medication
  • Personal first-aid kit, as desired
  • Insects are not usually a problem in high country of Arizona in late spring. Perhaps the occasional mosquitos at dusk, but ticks are not as bad here as in other places of the US. Long clothes help ward off insects. Still, feel free to bring repellent as desired.
Overnight accommodations in the field:
  • Fieldtrip travel and food expenses will be covered by the DISC fees.
  • Camping gear will be needed for this trip. If you have your own tent, sleeping bag, ground pad, personal utensils, etc., bring it all. If you need camping gear, inform us of what you need and we'll get it from UA Outdoor Recreation.
Conduct
All DISC participants shall: Also:
  • If you must arrive late or leave early (something not encouraged), please do so quietly.
  • If you have a phone (who doesn't?), please turn it off during class. If you must talk on your phone (does anyone talk on the phone anymore?) or text message someone during lecture, please do that outside of class.
  • If you must read the newspaper (anyone?), tackle the Wildcat crossword and sudoku puzzles (anyone?), study for other courses (occasionally), sleep (lots), surf the web, update Facebook, Farmville, shop Ebay, play online poker, watch DVD movies, binge watch Thrones, or do anything else not related to this course during our lecture time, please do it elsewhere, not in class. These activities are obvious (click here for an example) and are officially considered disruptive. See here for a UA student opinion about surfing the web in class.
  • Click here to see research saying people who multitask really aren't good at multitasking.
  • Racism, sexism, or violence will not be tolerated in the classroom.
  • It's acceptable—even encouraged—to collaborate with fellow students in this course. However, cheating will not be tolerated, including but not limited to:
    • Copying work of fellow students.
    • Plagiarism (click here for a definition of plagiarism).
  • Special note on plagiarism: Some definitions of plagiarism imply that all that is necessary to avoid it when copying someone else's text is to put it in quotes and then cite the original source. While technically this may be true and acceptable in some academic settings, copying someone else's text (put in quotes or otherwise) is hereby NOT acceptable in this course. This includes text from fellow students or students from past semesters, published articles or newspapers, and web sites. In short: Citing yes, copying and/or quoting no.
Special Provisions
  • In compliance with Title III of the Americans With Disabilities Act (1990), students who require special assistance will be suitably accommodated. Students must be registered with the University and a minimum notice of 5 days for such accommodations is requested.
  • Students requiring special accommodation: Please notify the professor and provide the Disability Resource Center letter within the first few days of the course.
  • Student athletes and others who need signatures periodically: Please notify the professor that you'll be needing signatures generally, and please alert the professor before a particular signing period is due so that your most up-to-date grade can be calculated.
Subject to Change
Information contained in this course syllabus, other than the grade and absence policies, may be subject to change with reasonable advance notice.


Tentative Schedule

(Note: It's not expected for readings linked here to be read
ahead of time; these are mostly resources for consulting later.)

Monday, May 15
Time Archaeology Ecology/Climatology
8:30-8:45 Arrival, coffee and bagels available
8:45-9:15 Welcome and introductions: faculty, staff, and students
9:15-10:15 Lecture: Physical and biological basis of tree rings (Steve Leavitt, classroom)
Speer: Botanical basis of dendrochronology
Bowyer et al.: Tree growth & woody tissue
Bowyer et al.: Composition & structure of wood cells
Bowyer et al.: Softwood structure
Bowyer et al.: Hardwood structure
Vaganov et al.: Mechanistic model of tree-ring growth
Steve's powerpoint slides
10:15-10:30 Break
10:30-11:30 Uniformitariansism, ecological amplitude and limiting factors (Ron Towner, classroom)
11:30-1:00 Break for lunch (Student Union to the north is nearby and open, see blue circle in map above, or click here)
1:00-2:00 Lab: Crossdating by Skeleton Plotting using the applet (Paul Sheppard, classroom, please have your laptop)
Sheppard: On the crossdating applet teaching tool
2:00-3:00 Tour of Bannister Tree-Ring Building (Paul Sheppard)
3:00-4:00 Crossdating Zuni samples (Ron, conference room) Equipment, food, and logistical planning for the field (Ceci & Paul, classroom)
4:00-5:00 Potential dendrochronology projects in the Arizona White Mountains (Paul Sheppard, Classroom)
Lecture: Basic fieldnotes (bring a rite-in-the-rain booklet and pencils) (Paul Sheppard, classroom)
ODK instructions for DISC
Brewer-Guiterman: ODK fieldwork


Tuesday, May 16
Time Archaeology Ecology/Climatology
9:00-10:00 Lecture: History of Dendrochronology in the Southwest (Ron Towner, classroom)
10:00-10:30 Break
10:30-11:30 Lecture: Basics of Dendroecology (Paul Sheppard, classroom)
11:30-1:00 Break for lunch
1:00-2:00 Lecture: Slash and Trash (Towner, where) Lecture: Quantitative Wood Anatomy (Kiyomi Morino, classroom)
2:00-2:30 Break
2:30-3:30 Lecture: Dendrodemography (Margaret Evans, classroom)


Wednesday, May 17
Time Archaeology Ecology/Climatology
morning
departure
Fieldtrip: Drive to Grants, NM (Archaeology staff: Ron) Fieldtrip: Drive to Arizona White Mountains, east-central Arizona (Ecology staff: Paul, Ceci)
noon lunch on the road lunch in Show Low
afternoon finish driving • ASNF-ATF comparison sampling
5:00-6:30 Dinner in town Dinner in Hoyer Camp
dusk   Campfire chat: Principles: limiting factors & ecological amplitude (all)
Fritts et al.: Tree rings along a vegetational gradient


Thursday, May 18
Time Archaeology Ecology/Climatology
all day Fieldwork: Project?
Fieldwork: Arizona White Mts., east-central Arizona. Projects:
• Ponderosa pine fire scars: locating and sampling
• Springerville Volcanic Field Vista
5:00-6:30 Dinner in town Dinner in Hoyer Camp
dusk   Field demo: Sharpening borers (all)
Campfire chat: Principles: uniformitarianism (but, age effects & divergence) (Paul Sheppard)
Speer: Uniformitarianism
Szeicz & MacDonald: Age-dependent dendroclimate modeling
D'Arrigo et al.: Divergence


Friday, May 19
Time Archaeology Ecology/Climatology
all day Fieldwork: Project?
Fieldwork: Arizona White Mts., east-central Arizona. Special treat in the morning:
• Morning: Guided tour of Casa Malpais, Springerville
• Lunch in Springerville
• Afternoon: Piñon pine chronology
Sipe White Mountain Wildlife Area
Greens Peak Fire Lookout
5:00-6:30 Dinner in town Dinner in camp
dusk   Campfire chat: Principles: linear aggregate model (Paul Sheppard)
Cook: Linear aggregate model


Saturday, May 20
Time Archaeology Ecology/Climatology
8:00 - 4:00 Fieldtrip: Return to Tucson Fieldwork: Arizona White Mts, east-central Arizona. Projects:
• Ponderosa pine chronology
• Quaking aspen chronology
• A couple fire scars to collect
• Douglas-fir growth post Wallow Fire
• Side trip to Big Lake


Sunday, May 21
Time Archaeology Ecology/Climatology
morning off Field demo: unsticking borers from trees
Phipps: How-to manual for processing increment cores (pages 18-20 cover unsticking borers from trees)
Yamaguchi: Retrieving a stuck borer
Loader: The "Decorum" borer unsticker
Return to Tucson, lunch along the way
afternoon off unpack vehicles
evening Optional: Picnic dinner and open-air concert of the Tucson Pops Orchestra, ride share to Reid Park, bring food and a chair


Monday, May 22
Time Archaeology Ecology/Climatology
9:00-9:45 Lecture: Cambium peeled trees in the Zuni Mountains (Ron Towner)
Towner & Galassini: Peeled trees of the Zuni Mountains
Off
9:45-10:45 Lecture: ???
10:45-11:00 break
11:00-12:00 Lecture: ???
12:00-1:00 Break for lunch
1:00-3:00 Lab: Mounting increment cores (Paul, classroom)
Phipps: How-to manual for processing increment cores (pages 27-31 cover mounting cores)
3:00-3:30 break
3:30-4:30 Archaeological sample preparation Unwrapping sections (Chris, Woodshop)
4:30-5:00 A student presentation: background and research (bring a powerpoint with a few slides, e.g., a map, a couple field shots, research objectives), and expect to fill ~5-10 minutes of presentation and Q&A time. Everyone participates. Today: Paul.


Tuesday, May 23
Time Archaeology Ecology/Climatology
9:00-9:45 Lecture: Recognizing insect signals in wood and ring-width series (Ann Lynch, classroom)
Swetnam et al.: Using dendrochronology to measure defoliated trees
Lynch: What tree-ring reconstruction says about defoliator outbreaks
O'Connor et al.: Post-fire dynamics affect spruce beetle outbreaks
9:45-10:45 Lecture: Climate change in the Four Corners and adjacent regions: Implication for past human occupation on the southern Colorado Plateau (Jeff Dean, classroom)
Dean & Funkhouser: Dendroclimate of the Southern Colorado Plateau
Jeff's lecture slides
10:45-11:00 break
11:00-12:00 History of SW Dendroarchaeology (Ron Towner, Conference room) Lecture: Dendroentomology II (Ann Lynch, Classroom)
12:00-1:00 Break for lunch
1:00-4:30 Wood shop: safety, mounting cross-sections, sanding samples (Chris)
Minor & Arizpe: Trimming down cross-sections, sanding cores

Sanding paper
Tree-ring sanding cartoon
4:30-5:00 A student presentation: background and research (bring a powerpoint with a few slides, e.g., a map, a couple field shots, research objectives), and expect to fill ~5-10 minutes of presentation and Q&A time. Everyone participates. Today: Chau.


Wednesday, May 24
Time Archaeology Ecology/Climatology
9:00-10:15 ??? Lecture: Marking rings, dot system (Paul Sheppard, classroom)
Ring markings
Fine sanding cores by hand, dotting
10:15-10:30 Break
10:30-11:45 ??? Lecture: Telervo, background and demo (Peter Brewer, classroom)
11:00-12:00 Lecture: Mediterranean dendroarchaeology (Charlotte Pearson, confirmed, Conference room)
readings to link?
Paleo Data Search: Start here for searching for tree-ring data on the ITRDB
Right click to download a couple existing ponderosa pine crns from the White Mountains:
Don Graybill, end year = 1986
Dan Griffen, end year = 2008
DPL, a DOS program that includes BAR, barplotting

Try BAR on the above chronologies, for example

Note: To print DPL outputs:
  1. Open in Word
  2. Select all
  3. Switch to landscape orientation
  4. Set all margins to 0.5"
  5. Switch font to Courier, size 8
  6. Add highlighting, text boxes, as desired
  7. Print in color, double-sided, long edge
  8. Mic drop
12:00-1:00 Break for lunch
1:00-4:30 Sample preparation and begin crossdating (Classroom) Lab: Continue crossdating samples
4:30-5:00 A student presentation: background and research (bring a powerpoint with a few slides, e.g., a map, a couple field shots, research objectives), and expect to fill ~5-10 minutes of presentation and Q&A time. Everyone participates. Today: Dan Griffen, rock star video on dendroclimatology in California.


Thursday, May 25
Time Archaeology Ecology/Climatology
9:00-9:45 Lecture: Introduction to measuring ring width (paul Sheppard, classroom)
Then: Starting a measuring session (prof, Lab room 314)
Measuring rings
Paul's paper sample
9:45-10:45 Lecture: Dendroarchaeology and human behavior (Jeff Dean)
Dean: Behavioral error in archaeological tree-ring dating
Measuring and verifying (Paul Sheppard, Classroom)
Grissino-Mayer: Measurement checking
Verify for Windows
Paul vs Paul verification output
Paul's rwl measurement file of the photocopied "core"
10:45-11:00 break
11:00-12:00 Lecture: Dating Kiva Murals of SE Utah (Nick Kessler, confirmed, Conference room)
readings to link?
Lecture: Data formats (Paul Sheppard, Classroom)
TRiDaS Website
Jansma et al.: TRiDaS
12:00-1:00 Break for lunch
1:00-4:30 Sample preparation and crossdating
Sample measuring
EDRM, the DPL app to edit ring measurement files
4:30-5:00 A student presentation: background and research (bring a powerpoint with a few slides, e.g., a map, a couple field shots, research objectives), and expect to fill ~5-10 minutes of presentation and Q&A time. Everyone participates. Today: LTRR Happy Hour.
Also, click here to order an LTRR t-shirt for yourself.


Friday, May 26
Time Archaeology Ecology/Climatology
9:00-9:45 Lecture: Time-series properties (interannual variability & autocorrelation) (Paul Sheppard, Classroom)
Douglass: Mean sensitivity
Strackee & Jansma: Mean sensitivity
Bunn: Intro to dplR
Biondi & Qeadan: Gini coefficient
Bunn et al.: Mean sensitivity
Spreadsheet of interannual variability measures
Ed Wright demo of indices of interannual variability

Yamaguchi: Crosscorrelation of tree-ring series
Spreadsheet of cross-correlations
9:45-10:45 Dateless archaeology (Ron Towner, Conference room) COFECHA (Paul Sheppard, classroom)
The program executable
A text file of info
Holmes: Computer quality control
Grissino-Mayer: COFECHA manual
Another COFECHA manual

COFECHA Example 1
Sunset Crater data, with issues
Output, with issues

COFECHA Example 2
Sunset Crater data, cleaned up
Output, cleaned up

COFECHA Example 3
Sunset Crater data, undated
Output, undated #1
Output, undated #2
10:45-11:00 break
11:00-12:00 Demonstration: Tellervo (Peter Brewer, confirmed, Room 414?)
Brewer: Tellervo
Tellervo download & access instructions
12:00-1:00 Break for lunch
1:00-4:30 Measure and COFECHA
refs?
4:30-5:00 A student presentation: background and research (bring a powerpoint with a few slides, e.g., a map, a couple field shots, research objectives), and expect to fill ~5-10 minutes of presentation and Q&A time. Everyone participates. Today: .
Also, click here to see an 8 x 12 version of the field trip group photo, or here for a 5 x 7 version. Let Paul know of any name errors and/or style issues.
If you'd like a board print of either one of these to take home, board prints can be done at Walgreen's, and for 60% off if we order all at the same time. The 8x10 print would cost $24 plus tax, and the 5x7 print would cost $15 plus tax.


Saturday, May 27
Time Archaeology Ecology/Climatology
morning Off, laundry, rest, etc.
midday
afternoon
evening


Sunday, May 28
Time Archaeology Ecology/Climatology
daytime
Optional: Morning outing to Arizona-Sonora Desert Museum. The ASDM is a world-renowned living museum of the Sonoran Desert, famously the "finest desert in the world." A must-see while in Tucson. We have a group entrance rate of $8.00 per person, but we must commit to a number of people in our group ahead of time. Please email Paul (email address above) your desire to do this half-day trip or not.

Otherwise: Off, laundry, rest, etc.
evening Optional: Picnic dinner and open-air concert of the Tucson Pops Orchestra, carpooling (?) to Reid Park, bring a chair


Monday, May 29
Time Archaeology Ecology/Climatology
morning 9:00-10:15: Lecture: Interpreting dates and behavior case study #1 (who?, conference room)
Lightfoot 1992: Dendro dating of Duckfoot, Southwestern Colorado



10:30-11:45: Lecture: Lyons and Campbell (Ron Towner, conference room)
refs?

9:00-10:45: More dotting, measuring, COFECHA of tree cores

11:00-12:00: Lecture: Basics of dendroclimatology (David Frank, confirmed)
Touchan et al.: Jemez NM precipitation reconstruction

12:00-1:00 Break for lunch
1:00-4:00 Lab: Continue on group projects (all)


Tuesday, May 30
Time Archaeology Ecology/Climatology
morning 9:30-10:45: Montezuma Castle Dendroarchaeology (Nick Kessler, conference room)
refs?



11:00-12:00: Navajo dendroarchaeology (Ron Towner, conference room)
refs?

9:00-10:00: Lecture: Low-severity fire regimes, FHAES (prof, classroom)
Falk et al.: Multi-scale controls of historical fire regimes
Fire History Analysis and Exploration System
Help for FHAES
About FHAES
Local PDSI for SEA
FHX for ZMT
BAN.FHX
BANbad.FHX
PDSI_GP119.csv
VJ.fhx
VSA.FHX
VSA_events.txt
arcal001.fhx
arcav001.fhx
arcon001.fhx
arnl2001.fhx


10:30-11:30: Continue measuring cores, COFECHA
11:30-12:00: BAI calculations and interpretation (Paul Sheppard, Classroom)
LeBlanc: On basal area increment
Centennial Forest spreadsheet
Biondi: BAI at the Gus Pearson
Paul's SMC spreadsheet

12:00-1:00 Break for lunch
1:00-4:30 Lab: Group projects (all)
4:30-5:00 Student presentation: Today:


Wednesday, May 31
Time Archaeology Ecology/Climatology
morning 9:00-10:15: (Irina?, Conference room)
refs?



10:30-11:45: Dendroarchaeology in central Asia (Irina Panyushkina, Conference room)
refs?

9:00-10:00: Lecture: Dendroclimate: Divergence (David Frank, Classroom)
10:30-12:00 Continue measuring, checking and fixing

12:00-1:00 Break for lunch
1:00-5:00 Lab: Group projects (all) mid-afternoon: a quick look at climate correlations with WME
YUX, for columnizing Tucson decadal formats
FMT, for sorting cores within a file
evening  
Working BBQ at Paul's house, to plan for presentations


Thursday, June 1
Time Archaeology Ecology/Climatology
morning 9:00-10:30: Interpreting Dates (who?, Conference room)
Street ref?



10:45-12:00: Interpreting Dates (who?, Conference room)
Snead ref?

9:00-10:00: Lecture: Essential resources for dendrochronology (Paul Sheppard)

Web:
The International Tree-Ring Data Bank
Grissino-Mayer & Fritts: ITRDB
DendroBox, a quick way to access ITRDB data sets
The International Multiproxy Paleofire Database
Online Biblio of Dendrochronology

Books:
Fundamentals of Tree-Ring Research (Click here for a book review of Fundamentals)
Tree Rings and Climate
An Introduction to Tree-Ring Dating
USGS: Collecting, Preparing, Crossdating, and Measuring Tree Increment Cores

Journals:
Tree-Ring Research, with access to high quality pdfs of past TRR papers
Dendrochronologia

Classic NGM issues:
National Geographic (March 1958): Bristlecone Pine, Oldest Living Thing
National Geographic (December 1929): Bridging the Gap

Professional society:
The Tree-Ring Society

Social Media:
The ITRDB Forum (email)
Facebook: Tree Rings and Dendro Things



10:30-11:15: Grand summary (Paul Sheppard, Classroom)
Sheppard: The many steps of dendro



11:15-12:00: open

12:00-1:00 Break for lunch
1:00-5:00 Lab: Group projects (all) Lab: Group projects (all)
ARSTAN executable
ARSTAN text file documentation
Cook-Holmes: 1986 ARSTAN Users Manual
1999 ARSTAN Users Manual
ARSTAN output
Prototype presentation of a final chronology


Friday, June 2
Time Archaeology Ecology/Climatology
Morning Preparation of group presentations
12:00-1:00 Break for lunch
1:00-2:00 Final preparation of group presentations
2:00-4:00 Group presentations, all of LTRR invited
4:00-5:00 Presentation of certificates (David Frank), acknowledgments & concluding remarks (any and all instructors who wish to comment)
A video postcard of DISC Ecology 2023. Five minutes long, best with headphones.
5:00-6:00
Happy Hour
Course evaluation, completion of 2023 DISC
6:30-9:00 Celebration gathering: 6:30 PM at Borderlands Brewing Company, 119 E. Toole Ave. The Blacktop Grill food truck will be there and serving.



Laboratory of Tree-Ring Research, University of Arizona
Tucson, Arizona 85721 USA